Make SD-VBS compatible with run_bench.sh and cleanup

SD-VBS:
- Run silently
- Fix some whitespace errors
- Don't duplicate extra.h
- Auto-detect if building with LITMUS-RT
- Disable result checking
- Add helper symlinks
Misc:
- Remove unused code from libextra
- Set some missing rt_param fields in libextra
- Disable CSV info dump from computeSMTslowdown.sh
- Widen scope of .gitignore on .txt files
- Include list of 2MB DIS pair benchmarks and inputs

25 files changed, 99 insertions, 583 deletions

diff --git a/.gitignore b/.gitignore
index 057a48b..0e0db96 100644
--- a/.gitignore
+++ b/.gitignore
@@ -3,6 +3,9 @@
 *.txt.clean
 # But not benchmark lists
 !*Names.txt
+# Special-case .txt handling for SD-VBS
+**/12345.txt
+!SD-VBS/benchmarks/**/*.txt
 
 # Ignore DIS benchmark binaries
 **/field
@@ -40,12 +43,7 @@
 **/statemate
 **/susan
 
-# Ignore random walk benchmark
-**/random_walk
-
-# Ignore misc debug and build outputs
-**/.gdb_history
-
+# Ignore SD-VBS binaries
 **/mser
 **/multi_ncut
 **/stitch
@@ -56,5 +54,10 @@
 **/sift
 **/localization
 **/disparity
-**/12345.txt
-!SD-VBS/**/*.txt
+
+# Ignore random walk benchmark
+**/random_walk
+
+# Ignore misc temporary files
+**/.gdb_history
+*.swp
diff --git a/SD-VBS/benchmarks/disparity/src/c/script_disparity.c b/SD-VBS/benchmarks/disparity/src/c/script_disparity.c
index 431c02c..7d45ada 100644
--- a/SD-VBS/benchmarks/disparity/src/c/script_disparity.c
+++ b/SD-VBS/benchmarks/disparity/src/c/script_disparity.c
@@ -28,9 +28,7 @@ int main(int argc, char* argv[])
     int WIN_SZ=8, SHIFT=64;
     FILE* fp;
     
-    printf("Image 1: ");
     scanf("%s", im1);
-    printf("Image 2: ");
     scanf("%s", im2);
 #ifdef CHECK
     char checkFile[100] = "./expected_C.txt";
@@ -86,17 +84,15 @@ int main(int argc, char* argv[])
     Iright_moved = iSetArray(paddedRows, paddedCols, 0);
 
     range = iMallocHandle(1, 2);
-    printf("starting..\n");
-    for_each_job{
-    retDisparity = getDisparity(imleft, imright, WIN_SZ, SHIFT, 
-                   minSAD, retDisp, halfWin,
-                   IrightPadded, IleftPadded, Iright_moved,
-                   retSAD, SAD, integralImg,
-                   range);
+    for_each_job {
+        retDisparity = getDisparity(imleft, imright, WIN_SZ, SHIFT,
+               minSAD, retDisp, halfWin,
+               IrightPadded, IleftPadded, Iright_moved,
+               retSAD, SAD, integralImg,
+               range);
     }
-    printf("ending\n");
 
-#ifdef CHECK   
+#ifdef CHECK
     /** Self checking - use expected.txt from data directory  **/
     {
         int tol, ret=0;
diff --git a/SD-VBS/benchmarks/localization/src/c/script_localization.c b/SD-VBS/benchmarks/localization/src/c/script_localization.c
index 3392320..ed37132 100644
--- a/SD-VBS/benchmarks/localization/src/c/script_localization.c
+++ b/SD-VBS/benchmarks/localization/src/c/script_localization.c
@@ -41,7 +41,6 @@ int main(int argc, char* argv[])
 
     char im1[100];
 
-    printf("Input txt File: ");
     scanf("%s", im1);
 
     fid = readFile(im1);
@@ -83,11 +82,10 @@ int main(int argc, char* argv[])
     F2D *randn;
 
     randn = randWrapper(n,3);
-    printf("start\n");
-    for_each_job{
-        fResetArray(pos,n, 3, 0);
-        fResetArray(vel,n, 3, 0);
-        fResetArray(ones,n,1,1);
+    for_each_job {
+        fResetArray(pos,n, 3, 0);
+        fResetArray(vel,n, 3, 0);
+        fResetArray(ones,n,1,1);
 
         {
             int j;
@@ -95,7 +93,7 @@ int main(int argc, char* argv[])
                 for(j=0; j<3; j++)
                     subsref(vel, i, j) += subsref(randn,i,j) * STDDEV_ODOVel;
 
-        }  
+        }
 
 
  
@@ -486,17 +484,15 @@ int main(int argc, char* argv[])
                 subsref(resultMat,1,icount) = velOut;
                 subsref(resultMat,2,icount) = posOut;
             }
-    
+
             fFreeHandle(sData);
-    
-        
+
             if (asubsref(isEOF,0) == 1)
                break;
         }
     }
-    printf("end..\n");
 
-#ifdef CHECK   
+#ifdef CHECK
     
     // Self checking - use expected.txt from data directory
     {
diff --git a/SD-VBS/benchmarks/mser/src/c/script_mser.c b/SD-VBS/benchmarks/mser/src/c/script_mser.c
index d4a98cd..3e98f86 100644
--- a/SD-VBS/benchmarks/mser/src/c/script_mser.c
+++ b/SD-VBS/benchmarks/mser/src/c/script_mser.c
@@ -33,7 +33,6 @@ int main(int argc, char* argv[])
 
     int ndims, nel, gdl, nmer;