54 files changed, 317 insertions, 446 deletions

diff --git a/all_pairs/Makefile b/all_pairs/Makefile
index 36cf55a..0042372 100644
--- a/all_pairs/Makefile
+++ b/all_pairs/Makefile
@@ -1,57 +1,73 @@
-CC = gcc
-CFLAGS = -pthread -O2
+LIBLITMUS ?= /media/speedy/litmus/liblitmus
+CC ?= gcc
+CFLAGS = -pthread -O2 -I.. -DPAIRED
 LDFLAGS = -lrt
-all: bin/cjpeg_wrbmp bin/huff_enc bin/gsm_enc bin/dijkstra bin/h264_dec bin/susan bin/adpcm_enc bin/rijndael_dec bin/huff_dec bin/rijndael_enc bin/gsm_dec bin/anagram bin/epic bin/ammunition bin/g723_enc bin/ndes bin/petrinet bin/statemate bin/cjpeg_transupp bin/mpeg2 bin/fmref bin/audiobeam bin/adpcm_dec bin/cleanupSemaphores
+COMMON = ../extra.h
+
+# Handle cases where we're also profiling with the MMDC on the i.MX6Q
+ifneq ($(shell grep "define MMDC 1" ../extra.h),)
+        COMMON += /media/speedy/litmus/tools/mmdc/mmdc.c
+endif
+
+# Include all the LITMUS^RT headers if we're using it
+ifneq ($(shell grep "define LITMUS 1" ../extra.h),)
+        CFLAGS += -I${LIBLITMUS}/include -I${LIBLITMUS}/arch/arm/include
+        LDFLAGS += -L${LIBLITMUS} -llitmus
+endif
+
+all: bin/cjpeg_wrbmp bin/huff_enc bin/gsm_enc bin/dijkstra bin/h264_dec bin/susan bin/adpcm_enc bin/rijndael_dec bin/huff_dec bin/rijndael_enc bin/gsm_dec bin/anagram bin/epic bin/ammunition bin/g723_enc bin/ndes bin/petrinet bin/statemate bin/cjpeg_transupp bin/mpeg2 bin/fmref bin/audiobeam bin/adpcm_dec
+
+debug: all
+debug: CFLAGS += -ggdb3
 
 .PHONY: clean
 clean:
-        rm bin/cjpeg_wrbmp bin/huff_enc bin/gsm_enc bin/dijkstra bin/h264_dec bin/susan bin/adpcm_enc bin/rijndael_dec bin/huff_dec bin/rijndael_enc bin/gsm_dec bin/anagram bin/epic bin/ammunition bin/g723_enc bin/ndes bin/petrinet bin/statemate bin/cjpeg_transupp bin/mpeg2 bin/fmref bin/audiobeam bin/adpcm_dec bin/cleanupSemaphores
+        rm -f bin/cjpeg_wrbmp bin/huff_enc bin/gsm_enc bin/dijkstra bin/h264_dec bin/susan bin/adpcm_enc bin/rijndael_dec bin/huff_dec bin/rijndael_enc bin/gsm_dec bin/anagram bin/epic bin/ammunition bin/g723_enc bin/ndes bin/petrinet bin/statemate bin/cjpeg_transupp bin/mpeg2 bin/fmref bin/audiobeam bin/adpcm_dec
 
-bin/cleanupSemaphores: ./source/extra.h  ./source/cleanupSemaphores.c
-        $(CC) $(CFLAGS) $^ -o $@ $(LDFLAGS)
-bin/cjpeg_wrbmp: ./source/extra.h  ./source/cjpeg_wrbmp/cjpeg_wrbmp.c ./source/cjpeg_wrbmp/input.c
+bin/cjpeg_wrbmp: ${COMMON} ./source/cjpeg_wrbmp/cjpeg_wrbmp.c ./source/cjpeg_wrbmp/input.c
         $(CC) $(CFLAGS) $^ -o $@ $(LDFLAGS)
-bin/huff_enc: ./source/extra.h  ./source/huff_enc/huff_enc.c
+bin/huff_enc: ${COMMON} ./source/huff_enc/huff_enc.c
         $(CC) $(CFLAGS) $^ -o $@ $(LDFLAGS)
-bin/gsm_enc: ./source/extra.h  ./source/gsm_enc/gsm_enc.c
+bin/gsm_enc: ${COMMON} ./source/gsm_enc/gsm_enc.c
         $(CC) $(CFLAGS) $^ -o $@ $(LDFLAGS)
-bin/dijkstra: ./source/extra.h  ./source/dijkstra/dijkstra.c ./source/dijkstra/input.c
+bin/dijkstra: ${COMMON} ./source/dijkstra/dijkstra.c ./source/dijkstra/input.c
         $(CC) $(CFLAGS) $^ -o $@ $(LDFLAGS)
-bin/h264_dec: ./source/extra.h  ./source/h264_dec/h264_dec.c ./source/h264_dec/h264_decinput.c
+bin/h264_dec: ${COMMON} ./source/h264_dec/h264_dec.c ./source/h264_dec/h264_decinput.c
         $(CC) $(CFLAGS) $^ -o $@ $(LDFLAGS)
-bin/susan: ./source/extra.h  ./source/susan/input.c ./source/susan/susan.c ./source/susan/wccfile.c ./source/susan/wcclibm.c ./source/susan/wccmalloc.c
+bin/susan: ${COMMON} ./source/susan/input.c ./source/susan/susan.c ./source/susan/wccfile.c ./source/susan/wcclibm.c ./source/susan/wccmalloc.c
         $(CC) $(CFLAGS) $^ -o $@ $(LDFLAGS)
-bin/adpcm_enc: ./source/extra.h  ./source/adpcm_enc/adpcm_enc.c
+bin/adpcm_enc: ${COMMON} ./source/adpcm_enc/adpcm_enc.c
         $(CC) $(CFLAGS) $^ -o $@ $(LDFLAGS)
-bin/rijndael_dec: ./source/extra.h  ./source/rijndael_dec/aes.c ./source/rijndael_dec/input_small_enc.c ./source/rijndael_dec/rijndael_dec.c ./source/rijndael_dec/rijndael_dec_libc.c
+bin/rijndael_dec: ${COMMON} ./source/rijndael_dec/aes.c ./source/rijndael_dec/input_small_enc.c ./source/rijndael_dec/rijndael_dec.c ./source/rijndael_dec/rijndael_dec_libc.c
         $(CC) $(CFLAGS) $^ -o $@ $(LDFLAGS)
-bin/huff_dec: ./source/extra.h  ./source/huff_dec/huff_dec.c
+bin/huff_dec: ${COMMON} ./source/huff_dec/huff_dec.c
         $(CC) $(CFLAGS) $^ -o $@ $(LDFLAGS)
-bin/rijndael_enc: ./source/extra.h  ./source/rijndael_enc/aes.c ./source/rijndael_enc/input_small.c ./source/rijndael_enc/rijndael_enc.c ./source/rijndael_enc/rijndael_enc_libc.c
+bin/rijndael_enc: ${COMMON} ./source/rijndael_enc/aes.c ./source/rijndael_enc/input_small.c ./source/rijndael_enc/rijndael_enc.c ./source/rijndael_enc/rijndael_enc_libc.c
         $(CC) $(CFLAGS) $^ -o $@ $(LDFLAGS)
-bin/gsm_dec: ./source/extra.h  ./source/gsm_dec/gsm_dec.c
+bin/gsm_dec: ${COMMON} ./source/gsm_dec/gsm_dec.c
         $(CC) $(CFLAGS) $^ -o $@ $(LDFLAGS)
-bin/anagram: ./source/extra.h  ./source/anagram/anagram.c ./source/anagram/anagram_input.c ./source/anagram/anagram_stdlib.c
+bin/anagram: ${COMMON} ./source/anagram/anagram.c ./source/anagram/anagram_input.c ./source/anagram/anagram_stdlib.c
         $(CC) $(CFLAGS) $^ -o $@ $(LDFLAGS)
-bin/epic: ./source/extra.h  ./source/epic/epic.c
+bin/epic: ${COMMON} ./source/epic/epic.c
         $(CC) $(CFLAGS) $^ -o $@ $(LDFLAGS)
-bin/ammunition: ./source/extra.h  ./source/ammunition/ammunition.c ./source/ammunition/ammunition_libc.c ./source/ammunition/arithm.c ./source/ammunition/bits.c
+bin/ammunition: ${COMMON} ./source/ammunition/ammunition.c ./source/ammunition/ammunition_libc.c ./source/ammunition/arithm.c ./source/ammunition/bits.c
         $(CC) $(CFLAGS) $^ -o $@ $(LDFLAGS)
-bin/g723_enc: ./source/extra.h  ./source/g723_enc/g723_enc.c
+bin/g723_enc: ${COMMON} ./source/g723_enc/g723_enc.c
         $(CC) $(CFLAGS) $^ -o $@ $(LDFLAGS)
-bin/ndes: ./source/extra.h  ./source/ndes/ndes.c
+bin/ndes: ${COMMON} ./source/ndes/ndes.c
         $(CC) $(CFLAGS) $^ -o $@ $(LDFLAGS)
-bin/petrinet: ./source/extra.h  ./source/petrinet/petrinet.c
+bin/petrinet: ${COMMON} ./source/petrinet/petrinet.c
         $(CC) $(CFLAGS) $^ -o $@ $(LDFLAGS)
-bin/statemate: ./source/extra.h  ./source/statemate/statemate.c
+bin/statemate: ${COMMON} ./source/statemate/statemate.c
         $(CC) $(CFLAGS) $^ -o $@ $(LDFLAGS)
-bin/cjpeg_transupp: ./source/extra.h  ./source/cjpeg_transupp/cjpeg_transupp.c
+bin/cjpeg_transupp: ${COMMON} ./source/cjpeg_transupp/cjpeg_transupp.c
         $(CC) $(CFLAGS) $^ -o $@ $(LDFLAGS)
-bin/mpeg2: ./source/extra.h  ./source/mpeg2/mpeg2.c
+bin/mpeg2: ${COMMON} ./source/mpeg2/mpeg2.c
         $(CC) $(CFLAGS) $^ -o $@ $(LDFLAGS)
-bin/fmref: ./source/extra.h  ./source/fmref/fmref.c ./source/fmref/wcclibm.c
+bin/fmref: ${COMMON} ./source/fmref/fmref.c ./source/fmref/wcclibm.c
         $(CC) $(CFLAGS) $^ -o $@ $(LDFLAGS)
-bin/audiobeam: ./source/extra.h  ./source/audiobeam/audiobeam.c ./source/audiobeam/audiobeaminput.c ./source/audiobeam/audiobeamlibmalloc.c ./source/audiobeam/audiobeamlibm.c
+bin/audiobeam: ${COMMON} ./source/audiobeam/audiobeam.c ./source/audiobeam/audiobeaminput.c ./source/audiobeam/audiobeamlibmalloc.c ./source/audiobeam/audiobeamlibm.c
         $(CC) $(CFLAGS) $^ -o $@ $(LDFLAGS)
-bin/adpcm_dec: ./source/extra.h  ./source/adpcm_dec/adpcm_dec.c
+bin/adpcm_dec: ${COMMON} ./source/adpcm_dec/adpcm_dec.c
         $(CC) $(CFLAGS) $^ -o $@ $(LDFLAGS)
+