Squashed commit of the sb-vbs branch.

Includes the SD-VBS benchmarks modified to:
- Use libextra to loop as realtime jobs
- Preallocate memory before starting their main computation
- Accept input via stdin instead of via argc

Does not include the SD-VBS matlab code.

Fixes libextra execution in LITMUS^RT.

1 files changed, 31 insertions, 0 deletions

diff --git a/SD-VBS/common/toolbox/toolbox_basic/affine/compute_J.m b/SD-VBS/common/toolbox/toolbox_basic/affine/compute_J.m
new file mode 100755
index 0000000..80db273
--- /dev/null
+++ b/SD-VBS/common/toolbox/toolbox_basic/affine/compute_J.m
@@ -0,0 +1,31 @@
+function [JJ,mask] = compute_J(A,D,I,center,window_size_h)
+%%  function J = compute_J(A,D,I,center,window_size_h)
+%
+
+[size_y,size_x] = size(I);
+
+center_x = center(1);
+center_y = center(2);
+
+[XX,YY] = meshgrid(1:size_x,1:size_y);
+x = reshape(XX,size_x*size_y,1);
+y = reshape(YY,size_x*size_y,1);
+index(:,1) = x-center_x;
+index(:,2) = y-center_y;
+
+position_new = A*index'+ [D(1),0;0,D(2)]*ones(2,size_x*size_y);
+position_new(1,:) = position_new(1,:)+center_x;
+position_new(2,:) = position_new(2,:)+center_y;
+
+position_new_x = reshape(position_new(1,:),size_y,size_x);
+position_new_y = reshape(position_new(2,:),size_y,size_x);
+
+[J,mask]= m_interp4(I,position_new_x,position_new_y);
+
+JJ = J(center(2)-window_size_h(2):center(2)+window_size_h(2),...
+       center(1)-window_size_h(1):center(1)+window_size_h(1));
+mask = mask(center(2)-window_size_h(2):center(2)+window_size_h(2),...
+       center(1)-window_size_h(1):center(1)+window_size_h(1));
+
+
+