Squashed commit of the sb-vbs branch.

Includes the SD-VBS benchmarks modified to:
- Use libextra to loop as realtime jobs
- Preallocate memory before starting their main computation
- Accept input via stdin instead of via argc

Does not include the SD-VBS matlab code.

Fixes libextra execution in LITMUS^RT.

1 files changed, 233 insertions, 0 deletions

diff --git a/SD-VBS/benchmarks/texture_synthesis/src/MEX/innerProd.prj b/SD-VBS/benchmarks/texture_synthesis/src/MEX/innerProd.prj
new file mode 100755
index 0000000..deba3f8
--- /dev/null
+++ b/SD-VBS/benchmarks/texture_synthesis/src/MEX/innerProd.prj
@@ -0,0 +1,233 @@
+<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
+
+<project>
+
+  <MATLABPath>
+    <Directory>/u/kvs/VisionBenchmark/texture_synthesis/src</Directory>
+    <Directory>/pkg/matlab/toolbox/compiler/deploy</Directory>
+    <Directory>/pkg/matlab/toolbox/matlab/general</Directory>
+    <Directory>/pkg/matlab/toolbox/matlab/ops</Directory>
+    <Directory>/pkg/matlab/toolbox/matlab/lang</Directory>
+    <Directory>/pkg/matlab/toolbox/matlab/elmat</Directory>
+    <Directory>/pkg/matlab/toolbox/matlab/elfun</Directory>
+    <Directory>/pkg/matlab/toolbox/matlab/specfun</Directory>
+    <Directory>/pkg/matlab/toolbox/matlab/matfun</Directory>
+    <Directory>/pkg/matlab/toolbox/matlab/datafun</Directory>
+    <Directory>/pkg/matlab/toolbox/matlab/polyfun</Directory>
+    <Directory>/pkg/matlab/toolbox/matlab/funfun</Directory>
+    <Directory>/pkg/matlab/toolbox/matlab/sparfun</Directory>
+    <Directory>/pkg/matlab/toolbox/matlab/scribe</Directory>
+    <Directory>/pkg/matlab/toolbox/matlab/graph2d</Directory>
+    <Directory>/pkg/matlab/toolbox/matlab/graph3d</Directory>
+    <Directory>/pkg/matlab/toolbox/matlab/specgraph</Directory>
+    <Directory>/pkg/matlab/toolbox/matlab/graphics</Directory>
+    <Directory>/pkg/matlab/toolbox/matlab/uitools</Directory>
+    <Directory>/pkg/matlab/toolbox/matlab/strfun</Directory>
+    <Directory>/pkg/matlab/toolbox/matlab/imagesci</Directory>
+    <Directory>/pkg/matlab/toolbox/matlab/iofun</Directory>
+    <Directory>/pkg/matlab/toolbox/matlab/audiovideo</Directory>
+    <Directory>/pkg/matlab/toolbox/matlab/timefun</Directory>
+    <Directory>/pkg/matlab/toolbox/matlab/datatypes</Directory>
+    <Directory>/pkg/matlab/toolbox/matlab/verctrl</Directory>
+    <Directory>/pkg/matlab/toolbox/matlab/codetools</Directory>
+    <Directory>/pkg/matlab/toolbox/matlab/helptools</Directory>
+    <Directory>/pkg/matlab/toolbox/matlab/demos</Directory>
+    <Directory>/pkg/matlab/toolbox/matlab/timeseries</Directory>
+    <Directory>/pkg/matlab/toolbox/matlab/hds</Directory>
+    <Directory>/pkg/matlab/toolbox/matlab/guide</Directory>
+    <Directory>/pkg/matlab/toolbox/matlab/plottools</Directory>
+    <Directory>/pkg/matlab/toolbox/local</Directory>
+    <Directory>/pkg/matlab/toolbox/shared/controllib</Directory>
+    <Directory>/pkg/matlab/toolbox/simulink/simulink</Directory>
+    <Directory>/pkg/matlab/toolbox/simulink/blocks</Directory>
+    <Directory>/pkg/matlab/toolbox/simulink/components</Directory>
+    <Directory>/pkg/matlab/toolbox/simulink/fixedandfloat</Directory>
+    <Directory>/pkg/matlab/toolbox/simulink/fixedandfloat/fxpdemos</Directory>
+    <Directory>/pkg/matlab/toolbox/simulink/fixedandfloat/obsolete</Directory>
+    <Directory>/pkg/matlab/toolbox/simulink/simdemos</Directory>
+    <Directory>/pkg/matlab/toolbox/simulink/simdemos/aerospace</Directory>
+    <Directory>/pkg/matlab/toolbox/simulink/simdemos/automotive</Directory>
+    <Directory>/pkg/matlab/toolbox/simulink/simdemos/simfeatures</Directory>
+    <Directory>/pkg/matlab/toolbox/simulink/simdemos/simgeneral</Directory>
+    <Directory>/pkg/matlab/toolbox/simulink/dee</Directory>
+    <Directory>/pkg/matlab/toolbox/shared/dastudio</Directory>
+    <Directory>/pkg/matlab/toolbox/shared/glue</Directory>
+    <Directory>/pkg/matlab/toolbox/stateflow/stateflow</Directory>
+    <Directory>/pkg/matlab/toolbox/rtw/rtw</Directory>
+    <Directory>/pkg/matlab/toolbox/simulink/simulink/modeladvisor</Directory>
+    <Directory>/pkg/matlab/toolbox/simulink/simulink/modeladvisor/fixpt</Directory>
+    <Directory>/pkg/matlab/toolbox/simulink/simulink/MPlayIO</Directory>
+    <Directory>/pkg/matlab/toolbox/simulink/simulink/dataobjectwizard</Directory>
+    <Directory>/pkg/matlab/toolbox/shared/fixedpointlib</Directory>
+    <Directory>/pkg/matlab/toolbox/simulink/dataimportexport</Directory>
+    <Directory>/pkg/matlab/toolbox/shared/hdlshared</Directory>
+    <Directory>/pkg/matlab/toolbox/rtw/rtwdemos</Directory>
+    <Directory>/pkg/matlab/toolbox/rtw/rtwdemos/rsimdemos</Directory>
+    <Directory>/pkg/matlab/toolbox/rtw/targets/asap2/asap2</Directory>
+    <Directory>/pkg/matlab/toolbox/rtw/targets/asap2/asap2/user</Directory>
+    <Directory>/pkg/matlab/toolbox/rtw/targets/common/can/blocks</Directory>
+    <Directory>/pkg/matlab/toolbox/rtw/targets/common/configuration/resource</Directory>
+    <Directory>/pkg/matlab/toolbox/rtw/targets/common/tgtcommon</Directory>
+    <Directory>/pkg/matlab/toolbox/stateflow/sfdemos</Directory>
+    <Directory>/pkg/matlab/toolbox/stateflow/coder</Directory>
+    <Directory>/pkg/matlab/toolbox/bioinfo/bioinfo</Directory>
+    <Directory>/pkg/matlab/toolbox/bioinfo/biolearning</Directory>
+    <Directory>/pkg/matlab/toolbox/bioinfo/microarray</Directory>
+    <Directory>/pkg/matlab/toolbox/bioinfo/mass_spec</Directory>
+    <Directory>/pkg/matlab/toolbox/bioinfo/proteins</Directory>
+    <Directory>/pkg/matlab/toolbox/bioinfo/biomatrices</Directory>
+    <Directory>/pkg/matlab/toolbox/bioinfo/biodemos</Directory>
+    <Directory>/pkg/matlab/toolbox/bioinfo/graphtheory</Directory>
+    <Directory>/pkg/matlab/toolbox/commblks/commblks</Directory>
+    <Directory>/pkg/matlab/toolbox/commblks/commmasks</Directory>
+    <Directory>/pkg/matlab/toolbox/commblks/commmex</Directory>
+    <Directory>/pkg/matlab/toolbox/commblks/commblksdemos</Directory>
+    <Directory>/pkg/matlab/toolbox/commblks/commblksobsolete/v3</Directory>
+    <Directory>/pkg/matlab/toolbox/commblks/commblksobsolete/v2p5</Directory>
+    <Directory>/pkg/matlab/toolbox/commblks/commblksobsolete/v2</Directory>
+    <Directory>/pkg/matlab/toolbox/comm/comm</Directory>
+    <Directory>/pkg/matlab/toolbox/comm/commdemos</Directory>
+    <Directory>/pkg/matlab/toolbox/comm/commdemos/commdocdemos</Directory>
+    <Directory>/pkg/matlab/toolbox/comm/commobsolete</Directory>
+    <Directory>/pkg/matlab/toolbox/compiler</Directory>
+    <Directory>/pkg/matlab/toolbox/control/control</Directory>
+    <Directory>/pkg/matlab/toolbox/control/ctrlguis</Directory>
+    <Directory>/pkg/matlab/toolbox/control/ctrlobsolete</Directory>
+    <Directory>/pkg/matlab/toolbox/control/ctrlutil</Directory>
+    <Directory>/pkg/matlab/toolbox/control/ctrldemos</Directory>
+    <Directory>/pkg/matlab/toolbox/shared/slcontrollib</Directory>
+    <Directory>/pkg/matlab/toolbox/curvefit/curvefit</Directory>
+    <Directory>/pkg/matlab/toolbox/curvefit/cftoolgui</Directory>
+    <Directory>/pkg/matlab/toolbox/shared/optimlib</Directory>
+    <Directory>/pkg/matlab/toolbox/database/database</Directory>
+    <Directory>/pkg/matlab/toolbox/database/dbdemos</Directory>
+    <Directory>/pkg/matlab/toolbox/database/vqb</Directory>
+    <Directory>/pkg/matlab/toolbox/dspblks/dspblks</Directory>
+    <Directory>/pkg/matlab/toolbox/dspblks/dspmasks</Directory>
+    <Directory>/pkg/matlab/toolbox/dspblks/dspmex</Directory>
+    <Directory>/pkg/matlab/toolbox/dspblks/dspdemos</Directory>
+    <Directory>/pkg/matlab/toolbox/shared/filterdesignlib</Directory>
+    <Directory>/pkg/matlab/toolbox/rtw/targets/ecoder</Directory>
+    <Directory>/pkg/matlab/toolbox/rtw/targets/ecoder/ecoderdemos</Directory>
+    <Directory>/pkg/matlab/toolbox/rtw/targets/mpt</Directory>
+    <Directory>/pkg/matlab/toolbox/rtw/targets/mpt/mpt</Directory>
+    <Directory>/pkg/matlab/toolbox/rtw/targets/mpt/user_specific</Directory>
+    <Directory>/pkg/matlab/toolbox/fixedpoint/fixedpoint</Directory>
+    <Directory>/pkg/matlab/toolbox/fixedpoint/fidemos</Directory>
+    <Directory>/pkg/matlab/toolbox/fixedpoint/fimex</Directory>
+    <Directory>/pkg/matlab/toolbox/fixpoint</Directory>
+    <Directory>/pkg/matlab/toolbox/gads</Directory>
+    <Directory>/pkg/matlab/toolbox/gads/gads</Directory>
+    <Directory>/pkg/matlab/toolbox/gads/gadsdemos</Directory>
+    <Directory>/pkg/matlab/toolbox/ident/ident</Directory>
+    <Directory>/pkg/matlab/toolbox/ident/idobsolete</Directory>
+    <Directory>/pkg/matlab/toolbox/ident/idguis</Directory>
+    <Directory>/pkg/matlab/toolbox/ident/idutils</Directory>
+    <Directory>/pkg/matlab/toolbox/ident/iddemos</Directory>
+    <Directory>/pkg/matlab/toolbox/ident/idhelp</Directory>
+    <Directory>/pkg/matlab/toolbox/images/images</Directory>
+    <Directory>/pkg/matlab/toolbox/images/imuitools</Directory>
+    <Directory>/pkg/matlab/toolbox/images/imdemos</Directory>
+    <Directory>/pkg/matlab/toolbox/images/iptutils</Directory>
+    <Directory>/pkg/matlab/toolbox/shared/imageslib</Directory>
+    <Directory>/pkg/matlab/toolbox/images/medformats</Directory>
+    <Directory>/pkg/matlab/toolbox/instrument/instrument</Directory>
+    <Directory>/pkg/matlab/toolbox/instrument/instrumentdemos</Directory>
+    <Directory>/pkg/matlab/toolbox/map/map</Directory>
+    <Directory>/pkg/matlab/toolbox/map/mapdemos</Directory>
+    <Directory>/pkg/matlab/toolbox/map/mapdisp</Directory>
+    <Directory>/pkg/matlab/toolbox/map/mapformats</Directory>
+    <Directory>/pkg/matlab/toolbox/map/mapproj</Directory>
+    <Directory>/pkg/matlab/toolbox/shared/mapgeodesy</Directory>
+    <Directory>/pkg/matlab/toolbox/slvnv/simcoverage</Directory>
+    <Directory>/pkg/matlab/toolbox/nnet</Directory>
+    <Directory>/pkg/matlab/toolbox/nnet/nncontrol</Directory>
+    <Directory>/pkg/matlab/toolbox/nnet/nndemos</Directory>
+    <Directory>/pkg/matlab/toolbox/nnet/nnet</Directory>
+    <Directory>/pkg/matlab/toolbox/nnet/nnet/nnanalyze</Directory>
+    <Directory>/pkg/matlab/toolbox/nnet/nnet/nncustom</Directory>
+    <Directory>/pkg/matlab/toolbox/nnet/nnet/nndistance</Directory>
+    <Directory>/pkg/matlab/toolbox/nnet/nnet/nnformat</Directory>
+    <Directory>/pkg/matlab/toolbox/nnet/nnet/nninit</Directory>
+    <Directory>/pkg/matlab/toolbox/nnet/nnet/nnlearn</Directory>
+    <Directory>/pkg/matlab/toolbox/nnet/nnet/nnnetinput</Directory>
+    <Directory>/pkg/matlab/toolbox/nnet/nnet/nnnetwork</Directory>
+    <Directory>/pkg/matlab/toolbox/nnet/nnet/nnperformance</Directory>
+    <Directory>/pkg/matlab/toolbox/nnet/nnet/nnplot</Directory>
+    <Directory>/pkg/matlab/toolbox/nnet/nnet/nnprocess</Directory>