Squashed commit of the sb-vbs branch.

Includes the SD-VBS benchmarks modified to:
- Use libextra to loop as realtime jobs
- Preallocate memory before starting their main computation
- Accept input via stdin instead of via argc

Does not include the SD-VBS matlab code.

Fixes libextra execution in LITMUS^RT.

1 files changed, 171 insertions, 0 deletions

diff --git a/SD-VBS/benchmarks/svm/src/c/script_svm.c b/SD-VBS/benchmarks/svm/src/c/script_svm.c
new file mode 100644
index 0000000..62a264d
--- /dev/null
+++ b/SD-VBS/benchmarks/svm/src/c/script_svm.c
@@ -0,0 +1,171 @@
+/********************************
+Author: Sravanthi Kota Venkata
+********************************/
+
+#include <stdio.h>
+#include <stdlib.h>
+#include "svm.h"
+#include <malloc.h>
+#include "extra.h"
+#define SVM_MEM 1<<24
+int main(int argc, char* argv[])
+{
+    SET_UP
+    mallopt(M_TOP_PAD, SVM_MEM);
+    mallopt(M_MMAP_MAX, 0);
+    int iter, N, Ntst, i, j, k, n;
+    F2D* trn1, *tst1, *trn2, *tst2, *Yoffset;
+    alphaRet* alpha;
+    F2D *a_result, *result;
+    F2D *s;
+    F2D *b_result;
+    F2D *Xtst, *Ytst;
+    char im1[256];
+    int dim = 256;
+
+    N = 100;
+    Ntst = 100;
+    iter = 10;
+
+    #ifdef test
+    N = 4;
+    Ntst = 4;
+    iter = 2;
+    #endif
+    
+    #ifdef sim_fast
+    N = 20;
+    Ntst = 20;
+    iter = 2;
+    #endif
+
+    #ifdef sim
+    N = 16;
+    Ntst = 16;
+    iter = 8;
+    #endif
+    
+    #ifdef sqcif
+    N = 60;
+    Ntst = 60;
+    iter = 6;
+    #endif
+    
+    #ifdef qcif
+    N = 72;
+    Ntst = 72;
+    iter = 8;
+    #endif
+    
+    #ifdef vga
+    N = 450;
+    Ntst = 450;
+    iter = 15;
+    #endif
+    
+    #ifdef wuxga
+    N = 1000;
+    Ntst = 1000;
+    iter = 20;
+    #endif
+
+
+    printf("trn file 1: ");
+    scanf("%s", im1);
+    trn1 = readFile(im1);   
+
+    printf("trn file 2: ");
+    scanf("%s", im1);
+    trn2 = readFile(im1);   
+
+    printf("tst file 1: ");
+    scanf("%s", im1);
+    tst1 = readFile(im1);   
+
+    printf("tst file 2: ");
+    scanf("%s", im1);
+    tst2 = readFile(im1);       
+
+    printf("start.\n");
+    for_each_job{
+        alpha = getAlphaFromTrainSet(N, trn1, trn2, iter);
+        a_result = alpha->a_result;
+        b_result = alpha->b_result;
+        Yoffset = fSetArray(iter, N, 0);
+    
+        Xtst = usps_read_partial(tst1, tst2, -1, 1, Ntst/iter, iter);
+        Ytst = usps_read_partial(tst1, tst2, -1, 0, Ntst/iter, iter);
+    
+        for(i=0; i<iter; i++)
+        {
+            F2D *temp;
+            temp = usps_read_partial(trn1, trn2, i, 0, N/iter, iter);
+            for(j=0; j<N; j++)
+                subsref(Yoffset,i,j) = asubsref(temp,j);
+            fFreeHandle(temp);
+        }
+    
+    
+        result = fSetArray(Ntst,1,0);
+        for( n=0; n<Ntst; n++)
+        {
+            float maxs=0;
+            s=fSetArray(iter,1,0);
+            for( i=0; i<iter; i++)
+            {
+                for (j=0; j<N; j++)
+                {
+                    if (subsref(a_result,i,j) > 0)
+                    {
+                        F2D *Xtemp, *XtstTemp, *X;
+                        X = alpha->X;
+                        Xtemp = fDeepCopyRange(X,j,1,0,X->width);
+                        XtstTemp = fDeepCopyRange(Xtst, n,1,0,Xtst->width);
+                        asubsref(s,i) = asubsref(s,i) + subsref(a_result,i,j) * subsref(Yoffset,i,j) * polynomial(3,Xtemp,XtstTemp, dim);
+                        fFreeHandle(Xtemp); 
+                        fFreeHandle(XtstTemp); 
+                    }
+                }
+                asubsref(s,i) = asubsref(s,i) - asubsref(b_result,i);
+                if( asubsref(s,i) > maxs)
+                    maxs = asubsref(s,i);
+            }
+            
+            fFreeHandle(s);
+            asubsref(result,n) = maxs;
+        }
+    }
+    printf("end..\n");
+#ifdef CHECK   
+    /** Self checking - use expected.txt from data directory  **/
+    {
+        int ret=0;
+        float tol = 0.5;
+#ifdef GENERATE_OUTPUT
+        fWriteMatrix(result, argv[1]);
+#endif
+        ret = fSelfCheck(result, "expected_C.txt", tol);
+        if (ret == -1)
+            printf("Error in SVM\n");
+    }
+    /** Self checking done **/
+#endif
+
+    fFreeHandle(trn1);
+    fFreeHandle(tst1);
+    fFreeHandle(trn2);
+    fFreeHandle(tst2);
+    fFreeHandle(Yoffset);
+    fFreeHandle(result);
+    fFreeHandle(alpha->a_result);
+    fFreeHandle(alpha->b_result);
+    fFreeHandle(alpha->X);
+    free(alpha);
+    fFreeHandle(Xtst);
+    fFreeHandle(Ytst);
+    WRITE_TO_FILE
+    return 0;
+}
+
+
+